publication venue for

• A distance-type measure approach to the analysis of copy number variation in DNA sequencing data 2019
• De novo transcriptome assembly of Pueraria montana var. lobate and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu 2018
• Improving eukaryotic genome annotation using single molecule mRNA sequencing 2018
• Detecting discordance enrichment among a series of two-sample genome-wide expression data sets 2017
• Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora 2017
• Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora 2017
• Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora. 2017
• Short tandem repeats, segmental duplications, gene deletion, and genomic instability in a rapidly diversified immune gene family 2016
• Short tandem repeats, duplications, deletions, and genomic instability in a rapidly diversified immune gene family 2016
• RNA-Seq analysis of the Drosophila transcriptomic response to infection by entomopathogenic nematodes and their mutualistic bacteria 2015
• Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium. 2014
• Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets 2014
• Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets 2014
• Distinct polyadenylation landscapes of diverse human tissues revealed by an improved PA-seq strategy 2013
• An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification 2010
• Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation 2010
• A method for identifying alternative or cryptic splice sites within gene and mRNA sequences 2009
• Developmental gene expression profiles of the human pathogen Schistosoma japonicum 2009
• Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum 2009
• Gene discovery for the carcinogenic human liver fluke, Opisthorchis viverrini 2007
• Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data 2006
• Gene expression profiling of lymphoblastoid cell lines from monzygotic twins discordant in severity of autism reveals differential regulation of neurologically relevant genes 2006
• A study of inter-lab and inter-platform agreement of DNA microarray data 2005
• Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni 2005
• SCReadCounts: Estimation of cell-level SNVs from scRNA-seq data